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- Version 1.1b + (21:17:32, 14 September 2014)
- Version 1.1a + (21:54:09, 14 September 2014)
- Domitilla Del Vecchio + (18:53:42, 16 September 2014)
- Errata: Fig 5.5 Caption + (17:52:31, 19 January 2015)
- Errata: Extra term \xi f in derivation of reaction rate equations in Section 2.1 + (18:54:16, 19 January 2015)
- Errata Equation 6.1 + (22:05:18, 2 July 2015)
- Errara: Sniffer + (22:39:49, 2 July 2015)
- Errara: Repressilator + (22:45:13, 2 July 2015)
- Errata: Fig 5.6 Caption + (22:47:49, 2 July 2015)
- Errata: Exercise 6.2 + (22:50:49, 2 July 2015)
- Errata: number of reactions + (22:54:55, 2 July 2015)
- Errata: Gillespie Algorithm + (22:58:03, 2 July 2015)
- Errata: Exercise 6.12 + (23:02:41, 2 July 2015)
- Errata instructions + (04:31:27, 3 July 2015)
- Errata: Derivation of CME in Chapter 2 is missing terms + (04:33:17, 3 July 2015)