My current work focuses on developing software infrastructure for scientific domains.
I co-developed and led to prominence the most widely-used format for exchanging computational models in systems biology, SBML (the Systems Biology Markup Language). I also co-founded BioModels.net, the Systems Biology Graphical Notation (SBGN), the Systems Biology Ontology (SBO), and helped start BioModels Database. To help better coordinate and support community standards in computational biology, I co-founded COMBINE (the Computational Modeling in Biology Network). I'm fortunate to be working with a superb team of computational scientists, as well as sensational international collaborators.
Recently, I have been working on ways to improve the preservation of knowledge and scientific data, as well as systems for finding software.
Earlier in my career, my research spanned computational neuroscience, cognitive science and artificial intelligence. This work included co-development of the first version of NeuroML, maintenance (for a time) of the GENESIS simulation system, research in cognitive science in the group of Stephen Kaplan, and research in the group of John Laird on applying the Soar cognitive architecture to robotics.
When not sitting in front of a computer or spending time with family and friends, I enjoy photography, skiing, and scuba diving.
California Institute of Technology
Computing and Mathematical Sciences, MC 305-16
1200 E. California Blvd. Pasadena, CA 91125, USA