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List of results

• Length and time scales of cell-cell signaling circuits in agar  + (14 July 2018 13:59:02)
• On-chip membrane protein cell-free expression enables development of a direct binding assay: A curious case of potassium channel KcsA-Kv1.3  + (15 July 2018 05:46:37)
• Temporal Logic Control of POMDPs via Label-based Stochastic Simulation Relations  + (15 July 2018 05:56:57)
• Andrew Halleran  + (3 August 2018 12:07:19)
• Ania Baetica  + (3 August 2018 12:10:16)
• Anandh Swaminathan  + (3 August 2018 12:11:26)
• Chelsea Hu  + (3 August 2018 12:12:22)
• Wenlong Xu, 14 Aug 2018  + (12 August 2018 06:49:43)
• File:Murray-14Dec16.jpg  + (8 September 2018 17:26:57)
• RMM photos  + (8 September 2018 17:28:18)
• Group Schedule, Spring 2018  + (8 September 2018 18:16:39)
• Group Schedule, Summer 2018  + (10 September 2018 20:45:43)
• Schedule  + (19 September 2018 04:09:52)
• Small comments on papers  + (21 September 2018 01:19:18)
• Daniel Fremont, Sep 2018  + (21 September 2018 21:00:11)
• Toward Specification-Guided Active Mars Exploration for Cooperative Robot Teams  + (26 September 2018 13:46:29)
• Cell-Free Extract Data Variability Reduction in the Presence of Structural Non-Identifiability  + (26 September 2018 13:46:45)
• A modal interface contract theory for guarded input/output automata with an application in traffic system design  + (8 October 2018 05:46:14)
• Risk-aware motion planning for automated vehicle among human-driven cars  + (8 October 2018 05:49:28)
• File:Buildacell.png  + (8 October 2018 05:56:49)
• User:Admin  + (8 October 2018 05:57:11)
• Bode Lecture 2016: Future Directions in Control: A Look Backwards and Forwards  + (23 October 2018 00:16:31)
• Group Schedule, Fall 2018  + (27 November 2018 07:51:45)
• File:Triple int.png  + (28 November 2018 00:08:58)
• File:Double int.png  + (28 November 2018 00:09:10)
• File:N integrator.png  + (28 November 2018 00:19:45)
• SURF 2019: Geometry of Control-Invariant Sets  + (28 November 2018 03:40:16)
• Paul Van den Hof, Dec 2018  + (7 December 2018 06:47:11)
• File:3-node Message Routing figure.png  + (10 December 2018 18:33:08)
• File:Message Routing Schematic.png  + (10 December 2018 18:58:14)
• SURF 2019: Engineering a synthetic high-bandwidth intercellular communication system through plasmid conjugation  + (10 December 2018 23:12:23)
• UG meetings, Fall 2018  + (11 December 2018 01:23:38)
• CDS 131, Fall 2018  + (11 December 2018 15:28:18)
• SURF 2019: Modeling and Analysis on Robust Synthetic Consortia with Localized Functions  + (12 December 2018 01:15:39)
• File:ADH evo stability.png  + (12 December 2018 03:02:29)
• SURF 2019: Evolutionary Stability of Genetic Circuits  + (12 December 2018 03:18:51)
• File:Aicb19-fieldprogrammable.png  + (25 December 2018 22:27:01)
• File:Arl19-cellfree.png  + (25 December 2018 22:47:08)
• File:Arl19-hybrid.png  + (25 December 2018 22:57:35)
• File:Arl19-zebrafish.png  + (25 December 2018 23:08:35)
• Biomolecular Circuits for Rapid Detection and Response to Environmental Events  + (25 December 2018 23:23:27)
• SURF 2019  + (26 December 2018 05:02:19)
• SURF 2019: River Mapping with Autonomous Surface Vehicles for Flood Hazard Monitoring  + (26 December 2018 05:07:37)
• File:Thor-setup.png  + (26 December 2018 05:08:47)
• Robust Estimation Framework with Semantic Measurements  + (27 December 2018 05:12:36)
• End-to-End Safe Reinforcement Learning through Barrier Functions for Safety-Critical Continuous Control Tasks  + (27 December 2018 05:18:35)
• Inverse Abstraction of Neural Networks Using Symbolic Interpolation  + (27 December 2018 05:21:34)
• Model of Paradoxical Signaling Regulated T-Cell Population Control for Design of Synthetic Circuits  + (27 December 2018 05:30:38)
• Cooperation Enhances Robustness of Coexistence in Spatially Structured Consortia  + (27 December 2018 05:33:33)
• Role of interaction network topology in controlling microbial population in consortia  + (27 December 2018 05:39:02)
• Hard Limits And Performance Tradeoffs In A Class Of Sequestration Feedback Systems  + (27 December 2018 05:42:27)
• Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors  + (27 December 2018 05:55:05)
• File:Darpa-biocon.png  + (27 December 2018 05:56:49)
• Yong Wu  + (2 January 2019 05:10:52)
• ICB Microbial, ICB Network19  + (2 January 2019 05:12:02)
• Rory Williams  + (2 January 2019 05:17:06)
• Alex White  + (2 January 2019 05:17:48)
• Anu Thubagere  + (2 January 2019 05:18:06)
• Vipul Singhal  + (2 January 2019 05:18:33)
• Andrey Shur  + (2 January 2019 05:19:12)
• Sean Sanchez  + (2 January 2019 05:20:51)
• Mark Prator  + (2 January 2019 05:22:54)
• Andrew Montequin  + (2 January 2019 05:25:00)
• Sofie Haesaert  + (2 January 2019 05:25:39)
• Shaobin Guo  + (2 January 2019 05:26:02)
• Leopold Green  + (2 January 2019 05:26:43)
• Ioannis Filippidis  + (2 January 2019 05:27:30)
• Jonathan Feldstein  + (2 January 2019 05:27:52)
• VeHICaL: Verified Human Interfaces, Control, and Learning for Semi-Autonomous Systems  + (2 January 2019 05:28:43)
• Jin Ge  + (2 January 2019 05:30:15)
• Joe Meyerowitz  + (2 January 2019 05:32:33)
• John Marken  + (2 January 2019 05:39:38)
• Lani Kim  + (2 January 2019 05:44:09)
• Rapid, Reliable and Repeatable Platforms for Cell-Free Prototyping  + (13 January 2019 22:56:38)
• Establishing microfluidic cell-free systems for the rapid prototyping of synthetic genetic networks  + (13 January 2019 22:57:01)
• SURF 2019: Synthetic modules for regulation of bacterial growth  + (15 January 2019 00:19:52)
• Timing molecular motion and production with a synthetic transcriptional clock  + (19 January 2019 16:05:51)
• User:Admin/Papers  + (19 January 2019 16:11:11)
• Engineering Transcriptional Regulator Effector Specificity Using Computational Design and In Vitro Rapid Prototyping: Developing a Vanillin Sensor  + (19 January 2019 16:15:08)
• Design Guidelines For Sequestration Feedback Networks  + (26 January 2019 15:47:53)
• Biophysical Constraints Arising from Compositional Context in Synthetic Gene Networks  + (26 January 2019 15:54:27)
• Recursively constructing analytic expressions for equilibrium distributions of stochastic biochemical reaction networks  + (26 January 2019 15:54:42)
• Cell-free and in vivo characterization of Lux, Las, and Rpa quorum activation systems in E. coli  + (26 January 2019 15:54:55)
• Rapid cell-free forward engineering of novel genetic ring oscillators  + (26 January 2019 15:55:15)
• Sara Molinari, 29 Jan 2019  + (30 January 2019 00:17:21)
• Ather Gattami, Feb 2019  + (19 February 2019 18:58:23)
• Elahe Aghapour, Feb 2019  + (19 February 2019 21:09:03)
• Field-Programmable, Recombinase-Based Biomolecular Circuits  + (22 February 2019 02:03:00)
• GOTChA Chart  + (22 February 2019 15:37:58)
• Group Schedule, Winter 2019  + (11 March 2019 16:42:16)
• Temporal Logic Control of Switched Affine Systems with an Application in Fuel Balancing  + (29 March 2019 20:05:02)
• Biographical Sketch  + (27 April 2019 02:17:31)
• Kristin Rozier, May 2019  + (17 May 2019 16:08:15)
• File:Nsf19-cellfree.png  + (21 May 2019 04:22:55)
• File:Arl20-elm.png  + (21 May 2019 04:39:26)
• UG meetings, Spring 2019  + (6 June 2019 05:59:33)
• Research Overview  + (8 June 2019 20:08:48)
• Control Theory for Synthetic Biology: Recent Advances in System Characterization, Control Design, and Controller Implementation for Synthetic Biology  + (8 June 2019 20:14:14)
• Layering assume-guarantee contracts for hierarchical system design  + (8 June 2019 20:15:24)
• Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape  + (9 June 2019 23:41:28)
• Addressable, “Packet-Based” Intercellular Communication through Plasmid Conjugation  + (9 June 2019 23:47:25)
• Proof of concept continuous event logging in living cells  + (9 June 2019 23:49:07)
• Quantitative characterization of random partitioning in the evolution of plasmid-encoded traits  + (9 June 2019 23:50:50)
• Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli  + (9 June 2019 23:53:06)
• Control of density and composition in an engineered two-member bacterial community  + (10 June 2019 00:03:42)
• Design of a genetic layered feedback controller in synthetic biological circuitry  + (10 June 2019 00:09:38)

• Bacterial Controller Aided Wound Healing: A Case Study in Dynamical Population Controller Design  + (10 June 2019 00:11:27)

• Contracts of Reactivity  + (10 June 2019 00:21:14)
• Ayush Pandey  + (10 June 2019 04:05:14)
• File:Assured-autonomy.png  + (10 June 2019 04:20:45)
• File:Afosr-testandeval.png  + (10 June 2019 04:29:43)
• Group Schedule, Spring 2019  + (10 June 2019 16:09:38)
• A Method for Cost-Effective and Rapid Characterization of Engineered T7-based Transcription Factors by Cell-Free Protein Synthesis Reveals Insights into the Regulation of T7 RNA Polymerase-Driven Expression  + (17 June 2019 00:13:20)
• An automated model reduction tool to guide the design and analysis of synthetic biological circuits  + (17 June 2019 00:13:37)
• Analysis of primitive genetic interactions for the design of a genetic signal differentiator  + (17 June 2019 00:13:46)
• Developing Standardized Cell-Free Platforms for Rapid Prototyping of Synthetic Biology Circuits and Pathways  + (1 July 2019 20:32:34)
• Molecular Programming Architectures, Abstractions, Algorithms, and Applications  + (1 July 2019 20:33:43)
• Stanley Bak, 8 July 2019  + (8 July 2019 13:50:59)
• Towards Assume-Guarantee Profiles for Autonomous Vehicles  + (1 August 2019 16:22:34)
• Expanded bio  + (10 August 2019 00:20:47)
• Synthetic biology future applications and technology needs  + (27 August 2019 00:41:08)
• SURF alumni  + (30 August 2019 04:47:51)
• Visitors  + (30 August 2019 04:55:52)
• A stochastic framework for the design of transient and steady state behavior of biochemical reaction networks  + (3 September 2019 16:32:03)
• Group Schedule, Summer 2019  + (7 September 2019 18:17:23)
• Sumanth Dathathri  + (15 September 2019 01:10:03)
• Samuel Clamons  + (18 September 2019 14:57:08)
• A Brain Circuit Program for Understanding the Sensorimotor Basis of Behavior  + (18 September 2019 14:58:24)
• Dissecting microbiome-gut-brain circuits for microbial modulation of host cognition in response to diet and stress  + (18 September 2019 15:00:30)
• Safety-Critical Autonomy and Verification for Space Missions  + (18 September 2019 15:03:04)
• Admin/Group members  + (18 September 2019 15:05:46)
• Karena Cai  + (18 September 2019 15:06:08)
• William Poole  + (18 September 2019 15:06:38)
• Michaelle Mayalu  + (18 September 2019 15:07:17)
• Elin Larsson  + (18 September 2019 15:08:10)
• John McManus  + (18 September 2019 15:08:46)
• Josefine Graebener  + (18 September 2019 15:12:52)
• Tung Phan  + (18 September 2019 15:13:30)
• Apurva Badithela  + (18 September 2019 15:14:25)
• Jake Beal, 1 Oct 2019  + (30 September 2019 23:04:48)
• Thomas Mohren, 2 Oct 2019  + (2 October 2019 18:19:03)
• File:Caltech-freeways.jpg  + (3 October 2019 21:15:38)
• File:Caltech-streets.jpg  + (3 October 2019 21:16:06)
• File:Campus-map.png  + (3 October 2019 21:18:54)
• Caltech directions  + (3 October 2019 21:21:48)
• Mike Biercuk, 7 Oct 2019  + (7 October 2019 21:02:47)
• BE 107, Spring 2019  + (12 October 2019 22:07:21)
• Sandeep Chichali, 16 Oct 2019  + (16 October 2019 01:37:34)
• Authorship  + (21 October 2019 23:57:40)
• Engineering Durable Cell-Free Biological Capabilities for Advanced Sensing and Prototyping  + (6 November 2019 16:13:25)
• Fundamental Biological Factors Underlying Human Performance: From Molecular Diagnostics and Detection to Behavior and Systems Biology  + (6 November 2019 16:13:38)
• Enabling Technologies for Cell-Silicon Interfacing  + (6 November 2019 16:13:53)
• Theory-Based Engineering of Biomolecular Circuits in Living Cells  + (6 November 2019 16:14:55)
• Formal Methods for V&V and T&E of Autonomous Systems  + (6 November 2019 16:16:43)
• Assurance for Learning Enabled Systems  + (6 November 2019 16:17:18)
• Chuchu Fan  + (6 November 2019 16:17:53)
• CMS 273, Winter 2019  + (19 November 2019 17:40:13)
• Group Schedule, Fall 2019  + (3 December 2019 03:09:52)
• File:Slide.png  + (3 December 2019 19:14:47)
• CS 142, Fall 2019  + (5 December 2019 17:01:59)
• File:Architecture auton sys.png  + (8 December 2019 20:16:01)
• Design of Digitally Controlled Bacterial Circuits for Bioenabled Materials  + (8 December 2019 20:26:41)
• James Parkin  + (8 December 2019 20:27:36)
• AFOSR  + (8 December 2019 20:44:06)
• Eric Wolff, 11 Dec 2019  + (10 December 2019 21:16:37)
• File:Gridworld sys env.png  + (10 December 2019 23:07:46)
• File:SynBioModelingPipeline.jpg  + (11 December 2019 06:08:36)
• SURF 2020: Test and Evaluation for Autonomy  + (15 December 2019 21:32:51)
• SURF 2020: Modeling tools for design and analysis of synthetic biological circuits  + (15 December 2019 21:37:33)
• SURF 2020: Rules of the Road--a top-down approach for guaranteeing correct behavior for self-driving cars  + (15 December 2019 21:41:47)
• SURF 2020: Social-Aware Robot Navigation  + (15 December 2019 21:51:09)
• File:2020 SURF fig.png  + (16 December 2019 18:25:09)
• File:SURF 2020 wahl murray.png  + (16 December 2019 18:27:16)
• File:CYHSURF2020.png  + (17 December 2019 05:25:41)
• SURF 2020: System identification of bacterial gene expression as a function of population dynamics  + (17 December 2019 05:26:00)
• CDS 131, Fall 2019  + (18 December 2019 07:20:48)
• SURF 2020: Applications of synthetic differentiation  + (22 December 2019 22:07:38)
• SURF 2020: Hardware Implementation of Contract-Based Design for Automated Valet Parking System  + (30 December 2019 18:08:56)
• SURF 2020  + (12 January 2020 22:22:53)
• SURF discussions, Jan 2019  + (20 January 2020 19:01:26)
• SURF GOTChA chart  + (22 January 2020 00:04:55)
• SURF 2020: Genetically-Programmed Synthetic Cells and Multi-Cellular Machines  + (23 January 2020 15:24:48)
• SURF discussions, Jan 2020  + (23 January 2020 22:26:05)
• Bio  + (5 February 2020 05:16:21)
• Liren Yang, 5-6 Feb 2020  + (6 February 2020 04:48:02)
• Sarah Dean, 11-12 Feb 2020  + (11 February 2020 00:06:55)
• David Garcia, 13 Feb 2020  + (13 February 2020 19:43:53)
• UG meetings, Dec 2019  + (22 February 2020 15:15:28)
• EECI 2020: Discrete Abstractions  + (29 February 2020 17:02:20)
• EECI 2020: Rulebooks  + (29 February 2020 17:31:11)
• EECI 2020: Course Introduction  + (1 March 2020 21:56:28)
• EECI 2020: Automata Theory  + (1 March 2020 22:10:56)
• EECI 2020: Temporal Logic  + (1 March 2020 22:19:30)
• EECI 2020: Reactive Synthesis  + (1 March 2020 22:38:25)
• EECI 2020: Model Checking  + (10 March 2020 07:56:30)
• EECI 2020: Probabilistic Systems  + (10 March 2020 07:57:46)
• EECI 2020: Computer Session: Stormpy  + (10 March 2020 08:00:30)
• Group Schedule, Winter 2020  + (12 March 2020 05:55:16)
• EECI-IGSC 2020  + (12 March 2020 09:24:28)
• EECI 2020: Minimum Violation Planning  + (13 March 2020 05:12:55)
• EECI 2020: Behavior Specifications  + (13 March 2020 07:26:33)
• EECI 2020: Computer Session: MVP  + (13 March 2020 07:36:24)
• EECI 2020: Safety-Critical Systems  + (13 March 2020 07:37:58)
• EECI 2020: Course Summary  + (13 March 2020 07:39:19)
• EECI 2020: Computer Session: TuLiP  + (18 March 2020 18:50:57)
• Courses  + (22 March 2020 21:00:52)
• Main Page  + (29 March 2020 02:03:52)
• CMS 273, Winter 2020  + (29 March 2020 21:48:18)
• Group Schedule, Spring 2020  + (1 April 2020 02:04:38)
• File:W1 setup-31Mar2020.pdf  + (2 April 2020 16:32:57)
• BE 240, Spring 2020  + (2 April 2020 16:34:14)
• E/SEC 103, Spring 2020  + (3 April 2020 20:40:09)