Difference between revisions of "Main Page"
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Copyright in this book is held by Princeton University Press, who have kindly agreed to allow us to keep the book available on the web.  Copyright in this book is held by Princeton University Press, who have kindly agreed to allow us to keep the book available on the web.  
+  
+  This textbook is intended for researchers interested in the application of feedback and control to biomolecular systems. The material has been designed so that it can be used in parallel with ''Feedback Systems'' as part of a course on biomolecular feedback and control systems, or as a standalone reference for readers who have had a basic course in feedback and  
+  control theory. This book is being written by [[http:www.mit.edu/~ddv/Domitilla Del Vecchio]] and [[Richard Murray]] based on a variety of presentations, lectures and notes.  
===== News ([[Archived newsarchive]]) =====  ===== News ([[Archived newsarchive]]) =====  
+  * 14 Sep 2014: PDFs posted  
* 10 Sep 2014: new web site set up  * 10 Sep 2014: new web site set up  
+  
+  === Contents ===  
+  { width=100% border=1  
+   valign=top  
+   width=50%   
+  * {{BFS pdfPreface and Contentsbfsfrontmatter14Sep14}}  
+  * Chapter 1: {{BFS pdfIntroductory Conceptsbfsintro14Sep14}}  
+  ** Systems Biology: Modeling, Analysis and the Role of Feedback  
+  ** The Cell as a System  
+  ** Control and Dynamical Systems Tools  
+  ** Input/Output Modeling  
+  ** From Systems to Synthetic Biology  
+  * Chapter 2: {{BFS pdfCore Processesbfscoreproc14Sep14}}  
+  ** Modeling Techniques  
+  ** Transcription and Translation  
+  ** Transcriptional Regulation  
+  ** PostTranscriptional Regulation  
+  ** Cellular Subsystems  
+  * Chapter 3: {{BFS pdfDynamic Behaviorbfsdynamics14Sep14}}  
+  ** Analysis Near Equilibria  
+  ** Robustness  
+  ** Oscillatory Behavior  
+  ** Bifurcations  
+  ** Model Reduction Techniques  
+  * Chapter 4: {{BFS pdfStochastic Modeling and Analysisbfsstochastic14Sep14}}  
+  ** Stochastic Modeling of Biochemical Systems  
+  ** Simulation of Stochastic Systems  
+  ** Input/Output Linear Stochastic Systems  
+  <!  
+  * Chapter 5: {{BFS pdfFeedback Examplesbfsfbkexamps14Sep14}}  
+  ** The ''lac'' Operon  
+  ** Bacterial chemotaxisbfschemotaxis  
+  >  
+   width=50%   
+  * Chapter 5: {{BFS pdfBiological Circuit Componentsbfscircuits14Sep14}}  
+  ** Introduction to Biological Circuit Design  
+  ** Negative Autoregulation  
+  ** The Toggle Switch  
+  ** The Repressilator  
+  ** Activatorrepressor Clock  
+  ** An Incoherent Feedforward Loop (IFFL)  
+  ** Bacterial Chemotaxis  
+  * Chapter 6: {{BFS pdfInterconnecting Componentsbfsmodules14Sep14}}  
+  ** Input/Output Modeling and the Modularity Assumption  
+  ** Introduction to Retroactivity  
+  ** Retroactivity in Gene Circuits  
+  ** Retroactivity in Signaling Systems  
+  ** Insulation Devices: Retroactivity Attentuation  
+  ** A Case Study on the Use of Insulation Devices  
+  * Chapter 7: {{BFS pdfDesign Tradeoffsbfstradeoffs14Sep14}}  
+  ** Competition for Shared Cellular Resources  
+  ** Stochastic Effects: Design Tradeoffs in Systems with Large Gains  
+  * Appendix A: A Primer on Control Theory  
+  <!  
+  * Appendix A: Cell Biology Primer (from NCBI)  
+  ** [http://www.ncbi.nlm.nih.gov/About/primer/genetics_cell.html What is a Cell]  
+  ** [http://www.ncbi.nlm.nih.gov/About/primer/genetics_genome.html What is a Genome]  
+  ** [http://www.ncbi.nlm.nih.gov/About/primer/genetics_molecular.html Molecular Genetics: Piecing It Together]  
+  ** [http://www.genome.gov/Glossary/ NHGRI Talking Glossary]  
+  * Appendix C: {{BFS pdfRandom Processesbfsrandom11Jul12}}  
+  ** Random Variables  
+  ** ContinuousState Random Processes  
+  ** DiscreteState Random Processes  
+  >  
+  * {{BFS pdfBibliography and Indexbfsbackmatter14Sep14}}  
+  }  
=== Resources ===  === Resources ===  
* [[ErrataList of errata]]  * [[ErrataList of errata]] 
Revision as of 21:06, 14 September 2014
Biomolecular Feedback Systems 
Domitilla Del Vecchio and Richard M. Murray 
Welcome to BFSwiki. This is the wiki for the text Biomolecular Feedback Systems by Domitilla Del Vecchio and Richard M. Murray. On this site you will find the complete text of the book as well as additional materials associated with the text.
Copyright in this book is held by Princeton University Press, who have kindly agreed to allow us to keep the book available on the web.
This textbook is intended for researchers interested in the application of feedback and control to biomolecular systems. The material has been designed so that it can be used in parallel with Feedback Systems as part of a course on biomolecular feedback and control systems, or as a standalone reference for readers who have had a basic course in feedback and control theory. This book is being written by Domitilla Del Vecchio and Richard Murray based on a variety of presentations, lectures and notes.
News (archive)
 14 Sep 2014: PDFs posted
 10 Sep 2014: new web site set up
Contents

