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An automated model reduction tool to guide the design and analysis of synthetic biological circuits
Abstract We present an automated model reduction al …
We present an automated model reduction algorithm that uses quasi-steady state approximation based reduction to minimize the error between the desired outputs. Additionally, the algorithm minimizes the sensitivity of the error with respect to parameters to ensure robust performance of the reduced model in the presence of parametric uncertainties. We develop the theory for this model reduction algorithm and present the implementation of the algorithm that can be used to perform model reduction of given SBML models. To demonstrate the utility of this algorithm, we consider the design of a synthetic biological circuit to control the population density and composition of a consortium consisting of two different cell strains. We show how the model reduction algorithm can be used to guide the design and analysis of this circuit.
e the design and analysis of this circuit.  +
Authors Ayush Pandey, Richard M. Murray  +
Funding Robust Multi-Layer Control Systems for Cooperative Cellular Behaviors +
ID 2019f  +
Source 2019 International Workshop on Biodesign Automation (IWBDA)  +
Tag PM19-iwbda  +
Title An automated model reduction tool to guide the design and analysis of synthetic biological circuits +
Type Conference paper  +
Categories Papers
Modification date
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17 June 2019 00:13:37  +
URL
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https://www.biorxiv.org/content/10.1101/640276v1  +
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An automated model reduction tool to guide the design and analysis of synthetic biological circuits + Title
 

 

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