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| Start | End | Speaker | Title | PPT | |
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| 1:00 | 2:00 | John Doyle | Introduction and Overview |  |
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| 2:00 | 3:00 | Frank Doyle | Analysis of High Throughput Data | n/a | |
| 3:00 | 3:30 | Break | |||
| 3:30 | 5:00 | Frank Doyle | Robustness Analysis of Circadian Rhythms | n/a | |
| Presentation |
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| Start | End | Speaker | Title | PPT | |
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| 8:30 | 9:00 | Coffee | |||
| 9:00 | 9:45 | John Doyle | Introduction and Overview of Signal Transduction | |
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| 9:45 | 11:45 | Drew Endy | Tutorial: Constructing Models of Biological Systems | |
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| 11:45 | 1:00 | Lunch | |||
| 1:00 | 3:00 | Mike Savageau | Demand Theory of Demand Theory of Gene Regulation and Design of Two-Component Systems | |
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| 3:00 | 3:30 | Break | |||
| 3:30 | 5:00 | Drew Endy | Metaphors and Yeast Pheromone Response | |
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| Presentation |
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| Start | End | Speaker | Title | PPT | |
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| 8:30 | 9:00 | Coffee | |||
| 9:00 | 9:45 | John Doyle | Introduction and Overview of Heat Shock Response | |
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| 9:45 | 11:45 | Adam Arkin | Tutorial: Regulation and Stress Response | |
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| 11:45 | 1:00 | Lunch | |||
| 1:00 | 2:15 | Dan Gillespie | Introduction to Multiscale Stochastic Simulation | |
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| 2:15 | 2:30 | Break | |||
| 2:30 | 3:45 | Dan Gillespie | New Challenges in Multiscale Stochastic Simulation | n/a | n/a |
| 4:00 | 5:30 | Adam Arkin | Regulation of Bacterial Stress Response | |
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| Presentation |
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| Start | End | Speaker | Title | PPT | |
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| 9:00 | 9:30 | Coffee | |||
| 9:30 | 11:45 | Mike Savageau | Realizations of Nonlinear Systems | |
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| 11:45 | 1:00 | Lunch | |||
| 1:00 | 3:30 | John Doyle | SOStools Overview | n/a | |
| Complexity and Computational Challenges in Systems Biology | |
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| 3:30 | ? | Discussion and Adjourn | |||