AFCS: Modeling Cellular Systems for Fun and Profit

Speakers: John Doyle & Adam Arkin

Slides from talks at Alliance meeting

1. Part 1 (ppt)

2. Part 2 (ppt)

Syllabus

Link to talks and papers by Arkin

Slides from recent talks (Doyle)

1. Notes on feedback (ppt)

Selected references and links (Doyle):

Robust perfect adaptation in bacterial chemotaxis through integral feedback control, Yi, Huang, Simon, and Doyle, PNAS, (Link or PDF)

Feedback regulation of the heat shock response in E. Coli, Kurata, El-Samad, Yi, Khammash, and Doyle, draft, (PS (7M) or Zipped (300k))

Introduction to Systems Biology Workbench, Hucka, Finney, Sauro, and Bolouri (PDF)

Systems Biology Workbench (Recent publications), Hucka, Finney, Sauro, and Bolouri

Systems Biology Workbench Development Group (Software Infrastructure for Systems Biology)

Notes, slides, and papers on complex networks